Molecular Phylogeny and Micro CT-Scanning Revealed Extreme Cryptic Biodiversity in Kukri Snake, Muhtarophis gen. nov., a New Genus for Rhynchocalamus barani (Serpentes: Colubridae)
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Akın C., Bilgin C. C., Beerli P., Westaway R., Ohst T., Litvinchuk S. N., Uzzell T., Bilgin M., Hotz H., Guex G. D., and Plötner J. (2010), «Phylogeographic patterns of genetic diversity in eastern Mediterranean water frogs were determined by geological processes and climate change in the Late Cenozoic», J. Biogeogr., 37, 2111 – 2124.
Avcı A., Ilgaz Ç., Kumlutaş Y., Olgun K., and Baran İ. (2007), «Morphology and distribution of Rhynchocalamus melanocephalus satunini (Nikolsky, 1899) in Turkey», Herpetozoa, 20, 82 – 86.
Avcı A., Dinçaslan Y. E., Ilgaz Ç., and Üzüm N. (2008), «Contributions to the distribution and morphology of Rhynchocalamus melanocephalus melanocephalus (Jan 1862) (Reptilia, Colubridae) in Turkey», N.-W. J. Zool., 4, 161 – 166.
Avcı A., Üzüm N., Ilgaz Ç., and Olgun K. (2009), «A new finding of Rhynchocalamus barani Baran’s Black-headed Dwarf Snake (Reptilia, Colubridae), in the Mediterranean Region of Turkey widens its distribution range», Acta Herpetol., 4, 177 – 182.
Baran İ. (1976), The Taxonomic Revision of Turkey Snakes and Their Geographical Distribution, TÜBİTAK Yayınları, Ankara.
Baran İ. and Atatür M. K. (1998), Turkish Herpetofauna (Amphibians & Reptiles), Republic of Turkish Ministry of Environment, Ankara.
Baran İ., Ilgaz Ç., Avcı A., Kumlutaş Y., and Olgun K. (2012), Türkiye Amfibi ve Sürüngenleri [Amphibians and Reptiles of Turkey ], TÜBİTAK Popüler Bilim Kitapları, Ankara [in Turkish].
Başoğlu M. and Baran İ. (1980), Türkiye Sürüngenleri Kısım II. Yılanlar [Turkish Reptiles. Part II. Snakes ], Ege Üniversitesi Fen Fakültesi Kitaplar Serisi, Bornova-İzmir [in Turkish].
Barbour T. (1914), «Notes on Some Reptiles from Sinai and Syria», Proc. New England Zool. Club, 5, 73 – 92.
Bellati A., Carranza S., Garcia-Porta J., Fasola M., and Sindaco R. (2014), «Cryptic diversity within the Anatololacerta species complex (Squamata: Lacertidae) in the Anatolian Peninsula: evidence from a multi-locus approach», Mol. Phylogen. Evol., DOI: dx.doi.org/10.1016/j.ympev.2014.10.003.
Boulenger G. A. (1894), Catalogue of the Snakes in the British Museum (Natural History). Volume II. Containing the Conclusion of the Colubridae Aglyphae, British Museum, London.
Burbrink F. T., Lawson R., and Slowinski J. B. (2000), «Mitochondrial DNA phylogeography of thepolytypic North American Rat Snake (Elaphe obsoleta): A critique of the subspecies concept», Evolution, 54, 2107 – 2118.
Çıplak B. (2004), «Biogeography of Anatolia: the marker group Orthoptera», Mem. Soc. Entomol. Ital., 82, 357 – 372.
Darevsky I. S. (1970), «Systematic status of Rhynchocalamus melanocephalus satunini Nik. (Serpentes, Colubridae) previously included in the genus Oligodon», Zool. Zh., 49, 1685 – 1690 [in Russian].
De Queiroz A., Lawson R., and Lemos-Espinal J. A. (2002), «Phylogenetic relationships of North American garter snakes (Thamnophis) based on four mitochondrial genes: how much DNA sequence is enough?» Mol. Phylogen. Evol., 22, 315 – 329.
De Queiroz K. (2007), «Species concepts and species delimitation», Syst. Biol., 56, 879 – 886.
Dowling H. G. (1951), «A proposed standard of counting ventrals in snakes», Br. J. Herpetol., 1, 97 – 99.
Eiselt J. (1970), «Ergebnisse zoologischer sammelreise in der Türkei: Bemerkenswerte funde von Reptilien I», Ann. Naturhist. Mus. Wien, 80, 803 – 814.
Engelmann W. E., Fritsche J., Günther R., and Obst F. J. (1993), Lurche und Kriechtiere Europas, Neumann Verlag, Radebeul, Germany.
Esterbauer H. (1985), «Zur herpetofauna südwestsyriens», Herpetofauna, 7, 23 – 34.
Esterbauer H. (1992), «Die herpetofauna des östlichen Golan und Hermongebietes. Funde und bemerkungen zur systematik und ökologie», Zool. Middle East, 7, 21 – 54.
Flower S. S. (1933), «Notes on the recent reptiles and amphibians of Egypt, with a list of the species recorded from that Kingdom», Proc. Zool. Soc. Lond., 1933, 735 – 851.
Franzen M. and Bischoff W. (1995), «Erstnachweis von Rhynchocalamus melanocephalus melanocephalus für die Turkei», Salamandra, 31, 107 – 122.
Gasperetti J. (1988), «Snakes of Arabia», Fauna of Saudi Arabia, 9, 169 – 450.
Gomez A. and Lunt D. H. (2007), «Refugia within refugia: patterns of phylogeographic concordance in the Iberian Peninsula», in: Weiss S. and Ferrand N. (eds.), Phylogeography in Southern European refugia: Evolutionary Perspectives on the Origin and Conservation of European Biodiversity, Springer, Dordrecht, pp. 155 – 188.
Johns G. C. and Avise J. C. (1998), «A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene», Mol. Biol. Evol., 15, 1481 – 1490.
Katoh K., Misawa K., Kuma K. I., and Miyata T. (2002), «MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform», Nucl. Acids Res., 30, 3059 – 3066.
Katoh K. and Toh H. (2008), «Recent developments in the MAFFT multiple sequence alignment program», Briefings Bioinform., 9, 286 – 298.
Kornilios P., Ilgaz Ç., Kumlutaş Y., Giokas S., Fraguedakis-Tsolis S., and Chondropoulos B. (2011), «The role of Anatolian refugia in herpetofaunal diversity: an mtDNA analysis of Typhlops vermicularis Merrem, 1820 (Squamata, Typhlopidae)», Amphibia–Reptilia, 32, 351 – 363.
Kornilios P., Ilgaz Ç., Kumlutaş Y., Lymberakis P., Moravec J., Sindaco R., Rastegar-Pouyani N., Afroosheh M., Giokas S., Fraguedakis-Tsolis S., and Chondropoulos B. (2012), «Neogene climatic oscillations shape the biogeography and evolutionary history of the Eurasian blindsnake», Mol. Phylogen. Evol., 62, 856 – 873.
Kyriazi P., Poulakakis N., Parmakelis A., Crochet P. A., Moravec J., Rastegar-Pouyani N., Tsigenopoulos C. S., Magoulas A., Mylonas M., and Lymberakis P. (2008), «Mitochondrial DNA reveals the genealogical history of the snake-eyed lizards (Ophisops elegans and O. occidentalis) (Sauria: Lacertidae)», Mol. Phylogen. Evol., 49, 795 – 805.
Kosswig C. (1955), «Zoogeography of the Near East», Syst. Zool., 4, 49 – 73.
Lanfear R., Calcott B., Ho S. Y. W., and Guindon S. (2012), «PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses», Mol. Biol. Evol., 29, 1695 – 1701.
Latifi M. (1991), The Snakes of Iran, SSAR, Oxford, Ohio.
Lawson R., Slowinski J. B., Crother B. I., and Burbrink F. T. (2005), «Phylogeny of the Colubroidea (Serpentes): new evidence from mitochondrial and nuclear genes», Mol. Phylogen. Evol., 37, 581 – 601.
Leviton A. E., Anderson S. C., Adler K., and Minton S. A. (1992), Handbook to Middle East Amphibians and Reptiles, SSAR, Oxford, Ohio.
List J. C. (1966), «Comparative osteology of the snake families Typhlopidae and Leptotyphlopidae», Illinois Biol. Monogr., 36, 1 – 112.
Mahlow K., Tillack F., Schmidtler J. F., and Müller J. (2013), «An annotated checklist, description and key to the dwarf snakes of the genus Eirenis Jan, 1863 (Reptilia: Squamata: Colubridae), with special emphasis on the dentition», Vertebr. Zool., 63, 41 – 85.
Masschaele B. C., Cnudde V., Dierick M., Jacobs P., Van Hoorebeke L., and Vlassenbroeck J. (2007), «UGCT: New x-ray radiography and tomography facility», Nucl. Instrum. Meth. Phys. Res. A, 580, 266 – 269.
Nikolsky A. M. (1899), «Contia statunini n. sp., and Agama ruderata Oliv., from Transcaucasia», Ann. Mus. Zool. l’Acad. Imp. Sci. St.-Pétersbourg, 4, 449 – 451 [in Russian].
Nikolsky A. M. (1905), «Herpetologia Rossica», Zap. Imp. Akad. Nauk St. Petersburg. Ser. VIII, XVII(1), 1 – 517.
Nilson G. and Rastegar-Pouyani N. (2007), «Walterinnesia aegyptia Lataste, 1887 (Ophidia: Elapidae) and the status of Naga morgani Mocquard 1905», Russ. J. Herpetol., 14, 7 – 14.
Olgun K., Avcı A., Ilgaz Ç., Üzüm N., and Yılmaz C. (2007), «A new species of Rhynchocalamus (Reptilia: Serpentes: Colubridae) from Turkey», Zootaxa, 1399, 57 – 68.
Padial J. M., Miralles A., De la Riva I., and Vences M. (2010), «Review: the integrative future of taxonomy», Frontiers Zool., 7, 1 – 14.
Platnick N. I. (1976), «Are monotypic genera possible?» Syst. Biol., 25, 198 – 199.
Plötner J., Ohst T., Böhme W., and Schreiber R. (2001), «Divergence in mitochondrial DNA of near Eastern water frogs with special reference to the systematic status of Cypriote and Anatolian populations (Anura, Ranidae)», Amphibia–Reptilia, 22, 397 – 412.
Poulakakis N., Lymberakis P., Tsigenopoulos C. S., Magoulas A., and Mylonas M. (2005), «Phylogenetic relationships and evolutionary history of snake-eyed skink Ablepharus kitaibelii (Sauria: Scincidae)», Mol. Phylogen. Evol., 34, 245 – 256.
Pyron R. A., Burbrink F. T., Colli G. R., de Oca A. N. M., Vitt L. J., Kuczynski C. A., and Wiens J. J. (2011), «The phylogeny of advanced snakes (Colubroidea), with discovery of a new subfamily and comparison of support methods for likelihood trees», Mol. Phylogen. Evol., 58, 329 – 342.
Pyron R. A., Burbrink F. T., and Wiens J. J. (2013), «A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes», BMC Evol. Biol., 13, 1 – 53.
Rambaut A. and Drummond A. J. (2009), Tracer v. 1.5 (on-line). Available from: http.ac.uk/Tracer (accessed 1 January 2013).
Rajabizadeh M. (2013), Biodiversity of the Snakes in Northern and Western Mountains of Iran, with Special Emphasis on Biodiversity in Colubroids. Ph.D. Thesis, Ghent University.
Rokas A. and Carroll S. B. (2005), «More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy», Mol. Biol. Evol., 22, 1337 – 1344.
Romer A. S. (1956), Osteology of the Reptiles. 1997 Reprint Edition, Krieger Publ. Co., Malabar, Florida.
Reed C. and Marx H. (1959), «A herpetological collection from northeastern Iraq», Trans. Kansas Acad. Sci., 62, 91 – 122.
Ronquist F., Teslenko M., van der Mark P., Ayres D., Darling A., Höhna S., Larget B., Liu L., Suchard M. A., and Huelsenbeck J. P. (2012), «MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space», Syst. Biol., 61, 539 – 542.
Schmidt K. P. (1933), «A new snake (Rhynchocalamus arabicus) from Arabia», Zool. Ser. Field Mus. Nat. Hist., 20, 9 – 10.
Schmidt K. P. (1939), «Reptiles and amphibians from southwestern Asia», Zool. Ser. Field Mus. Nat. Hist., 24, 49 – 92.
Silvestro D. and Michalak I. (2012), «raxmlGUI: A graphical front-end for RAxML», Org. Divers Evol., 12, 335 – 337.
Sindaco R., Kornilios P., Sacchi R., and Lymberakis P. (2014), «Taxonomic reassessment of Blanus strauchi (Bedriaga, 1884) (Squamata: Amphisbaenia: Blanidae), with the description of a new species from south-east Anatolia (Turkey)», Zootaxa, 3795, 311 – 326.
Tchernov E. (1992), «The Afro-Arabian component in the Levantine mammalian fauna: a short biogeographical review», Isr. J. Zool., 38, 155 – 192.
Türkmen N. and Düzenli A. (1998), «The flora of Dörtyol and Erzin districts of Hatay Province in Turkey», Turk. J. Botany, 22, 121 – 141.
Vidal N., Delmas A. S., David P., Cruaud C., Coujoux A., and Hedges S. B. (2007), «The phylogeny and classification of caenophidian snakes inferred from seven nuclear protein-coding genes», Comptes Rendus Biol., 330, 182 – 187.
Vlassenbroeck J., Dierick M., Masschaele B., Cnudde V., Van Hoorebeke L., and Jacobs P. (2007), «Software tools for quantification of x-ray microtomography at the UGCT», Nucl. Instr. Meth. Phys. Res. A, 580, 442 – 445.
Werner F. (1906), «Einige für Kleinasien neue Reptilien», Zool. Anz., XXIX, 411 – 413.
Werner F. (1917), «Reptilien aus Persien (Provinz Fars). Gesammelt von Prof. Andreas», Verh. Zool. Bot. Ges. Wien, 67, 191 – 220.
Werner Y. L. (1988), «Herpetofaunal survey of Israel (1950 – 1985), with comments on Sinai and Jordan and on zoogeographical heterogeneity», in: Yom-Tov Y. and Tchernov E. (eds.), The Zoogeography of Israel, Dr. W. Junk Publishers, Dordrecht, Netherlands.
Wiley E. O. (1978), «The evolutionary species concept reconsidered», Syst. Biol., 27, 17 – 26.
Xia X. and Lemey P. (2009), «Assessing substitution saturation with DAMBE», in: Lemey P., Salemi M., and Vandamme A. M. (eds.), The Phylogenetic Handbook: A Practical Approach to DNA and Protein Phylogeny. 2nd Edition, Cambridge Univ. Press, pp. 615 – 630.
Yılmaz N., Bardakçı F., Avcı A., Yılmaz C., Bağda E., Üzüm N., and Olgun K. (2009), «Re-evaluation of taxonomic status of genus Rhynchocalamus using mitocondrial cyt b gene», in: 15th Eur. Congr. Herpetol., Kuşadası-Aydın/Turkey.
Zaher H., Grazziotin F. G., Graboski R., Fuentes R. G., Sánchez-Martinez P., Montingelli G. G., and Murphy R. W. (2012), «Phylogenetic relationships of the genus Sibynophis (Serpentes: Colubroidea)», Papéis Avul. Zool. São Paulo, 52, 141 – 149.
Zug G. R., Vitt L. J., and Caldwell J. P. (2001), Herpetology: an Introductory Biology of Amphibians and Reptiles, Acad. Press.
DOI: https://doi.org/10.30906/1026-2296-2015-22-3-159-174
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